Best Alternatives to QuickBooks Desktop Syncfor Shopify (2026)

EasyScan focuses on improving order fulfillment and inventory management through barcode scanning. Its features include a barcode/SKU generator, barcode printer, and the ability to scan retail barcode labels for order and inventory checks. This can streamline warehouse operations and reduce fulfillment errors.

Report Toaster offers powerful custom reporting and analytics features, including real-time data access, multi-store reporting, and the ability to schedule and automate report delivery. The app boasts a range of report templates to assist getting started with data analysis.

Mipler offers comprehensive reporting and dashboard capabilities to analyze your store's performance. Its key advantage lies in the ability to create custom reports using a wide range of data points, including metafields and tags, allowing for in-depth analysis beyond standard financial reports.

If you operate multiple stores, warehouses, or utilize dropshippers, Order Fulfillment Guru can automate order routing and synchronize inventory between stores. The system supports splitting orders to various locations and offers real-time product and order syncing.

Simple Affiliate focuses on managing affiliate marketing programs. This tool is not sufficient to replace QuickBooks Desktop Sync.

This app appears to only focus on invoice generation which is not sufficient to replace Quickbooks Desktop Sync. This tool is not suitable.

For US-based businesses, Tax Rex automates sales tax reporting and filing. It provides accurate tax reports, economic nexus alerts, and simplified state registration to help merchants comply with sales tax regulations.

If your business is based in India, WebPlanex offers a solution tailored for GST compliance. It automatically generates GST-ready invoices, calculates GST based on fulfillment location, and provides sales reports specifically for GSTR-3B and GSTR-1 returns, eliminating the need for manual data entry into third-party software.

Thrive provides a comprehensive inventory management system with features like demand forecasting, multi-channel syncing, bundle tracking, and component-level tracking. It also offers prebuilt reports and automated purchase orders to help manage inventory effectively.

Synkro focuses on syncing inventory, products, and orders across multiple stores in real-time. It allows for custom price rules and automated product cloning, simplifying multi-store management.